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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
28
single cell RNA-seq
15
total RNA-seq
11
WGBS
3
ATAC-seq
Assay category
56
DNA binding
43
Transcription
11
DNA methylation
3
DNA accessibility
Target of assay
48
transcription factor
8
control
6
RNA binding protein
2
chromatin remodeller
Date released
29
November, 2017
17
April, 2018
15
February, 2018
11
August, 2017
9
November, 2018
8
July, 2018
7
October, 2018
6
February, 2021
3
December, 2018
3
October, 2017
2
January, 2019
2
September, 2020
1
June, 2018
Available data
111
fastq
103
bam
95
bigWig
47
tsv
44
bed narrowPeak
41
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
zippedFastqFolder
Organism
113
Homo sapiens
Biosample type
42
cell line
34
primary cell
22
tissue
15
in vitro differentiated cells
Organ
33
liver
30
pancreas
24
epithelium
15
adipose tissue
15
connective tissue
10
blood
10
bodily fluid
4
embryo
Project
105
AMP
8
HPAP
Genome assembly (visualization)
95
GRCh38
92
hg19
Lab
105
AMP-T2D consortium
8
Klaus Kaestner, Upenn
Audit category:
7
missing controlled_by
files.platform.term_name!
Illumina HiSeq 4000
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
cell line
HepG2
32
GM12878
10
primary cell
pancreatic alpha cell
4
6
mesenchymal cell
4
pancreatic beta cell
4
pancreatic cell
4
pancreatic delta cell
3
+ See 4 more…
tissue
white adipose tissue
7
body of pancreas
2
3
subcutaneous adipose tissue
5
adipose tissue
3
liver
1
+ See 1 more…
in vitro differentiated cells
pancreatic endoderm
4
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 2 more…
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