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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 56ChIP-seq
  • 28single cell RNA-seq
  • 15total RNA-seq
  • 11WGBS
  • 3ATAC-seq
Assay category
  • 56DNA binding
  • 43Transcription
  • 11DNA methylation
  • 3DNA accessibility
Target of assay
  • 48transcription factor
  • 8control
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 29November, 2017
  • 17April, 2018
  • 15February, 2018
  • 11August, 2017
  • 9November, 2018
  • 8July, 2018
  • 7October, 2018
  • 6February, 2021
  • 3December, 2018
  • 3October, 2017
  • 2January, 2019
  • 2September, 2020
  • 1June, 2018
Available data
  • 111fastq
  • 103bam
  • 95bigWig
  • 47tsv
  • 44bed narrowPeak
  • 41bigBed narrowPeak
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 113Homo sapiens
Biosample type
  • 42cell line
  • 34primary cell
  • 22tissue
  • 15in vitro differentiated cells
Organ
  • 33liver
  • 30pancreas
  • 24epithelium
  • 15adipose tissue
  • 15connective tissue
  • 10blood
  • 10bodily fluid
  • 4embryo
Project
  • 105AMP
  • 8HPAP
Genome assembly (visualization)
  • 95GRCh38
  • 92hg19
Lab
  • 105AMP-T2D consortium
  • 8Klaus Kaestner, Upenn
Audit category:
  • 7missing controlled_by
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

113 results

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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
cell line
HepG232
GM1287810
primary cell
pancreatic alpha cell46
mesenchymal cell4
pancreatic beta cell4
pancreatic cell4
pancreatic delta cell3
tissue
white adipose tissue7
body of pancreas23
subcutaneous adipose tissue5
adipose tissue3
liver1
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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