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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 199total RNA-seq
  • 42WGBS
  • 7ChIP-seq
  • 1DNase-seq
Assay category
  • 199Transcription
  • 42DNA methylation
  • 7DNA binding
  • 1DNA accessibility
Target of assay
  • 7transcription factor
Date released
  • 93August, 2017
  • 76February, 2023
  • 41May, 2022
  • 26September, 2018
  • 6February, 2018
  • 2November, 2017
  • 2November, 2018
  • 2October, 2018
  • 1December, 2018
Available data
  • 208fastq
  • 132bam
  • 132bigWig
  • 123tsv
  • 41zippedFastqFolder
  • 5bed narrowPeak
  • 5bigBed narrowPeak
  • 1bed bedMethyl
  • 1bed broadPeak
  • 1bigBed bedMethyl
  • 1bigBed broadPeak
Organism
  • 249Homo sapiens
Biosample type
  • 146primary cell
  • 93tissue
  • 6in vitro differentiated cells
  • 4cell line
Organ
  • 196pancreas
  • 106epithelium
  • 3adipose tissue
  • 3connective tissue
  • 2blood
  • 2bodily fluid
  • 2liver
  • 1embryo
Project
  • 132AMP
  • 117HPAP
Genome assembly (visualization)
  • 131GRCh38
  • 131hg19
Lab
  • 132AMP-T2D consortium
  • 117Klaus Kaestner, Upenn
Audit category:
  • 3missing controlled_by
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

249 results

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Clear Filters
total RNA-seq
WGBS
ChIP-seq
DNase-seq
primary cell
pancreatic alpha cell3725
exocrine cell39
pancreatic beta cell2016
pancreatic acinar cell4
pancreatic ductal cell4
tissue
islet of Langerhans89
white adipose tissue3
pancreas1
in vitro differentiated cells
definitive endodermal cell1
embryonic stem cell1
endocrine cell1
pancreatic endoderm1
posterior foregut1
cell line
GM128782
HepG22
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