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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124total RNA-seq
  • 86ChIP-seq
  • 76ATAC-seq
  • 62single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 186Transcription
  • 128DNA accessibility
  • 86DNA binding
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 53transcription factor
  • 23control
  • 10chromatin remodeller
  • 10histone modification
  • 9RNA binding protein
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 134May, 2022
  • 108August, 2017
  • 45February, 2021
  • 41September, 2018
  • 34November, 2017
  • 26November, 2018
  • 17October, 2018
  • 8July, 2018
  • 7April, 2018
  • 7August, 2020
  • 7January, 2019
  • 5September, 2017
  • 4December, 2018
  • 4October, 2017
  • 3September, 2020
  • 1August, 2018
  • 1June, 2018
  • 1March, 2019
Available data
  • 319fastq
  • 260bam
  • 247bigWig
  • 145tsv
  • 134zippedFastqFolder
  • 92bed narrowPeak
  • 80bigBed narrowPeak
  • 6bed broadPeak
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 4bigBed broadPeak
  • 2bed bed3+
  • 2csv
Organism
  • 453Homo sapiens
Biosample type
  • 258primary cell
  • 136tissue
  • 58cell line
  • 1in vitro differentiated cells
Organ
  • 256pancreas
  • 156epithelium
  • 62liver
  • 14connective tissue
  • 13adipose tissue
  • 10blood
  • 10bodily fluid
  • 8spleen
  • 1brain
Project
  • 264AMP
  • 189HPAP
Genome assembly (visualization)
  • 244GRCh38
  • 232hg19
Lab
  • 262AMP-T2D consortium
  • 189Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

453 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
primary cell
Langerhans cell4548
pancreatic alpha cell1035231
pancreatic beta cell1023216
pancreatic acinar cell492
pancreatic ductal cell442
tissue
islet of Langerhans912
liver131
subcutaneous adipose tissue9
spleen62
body of pancreas232
cell line
HepG254111
GM1287810
in vitro differentiated cells
adipocyte1
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