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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
64
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
64
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
32
histone
32
histone modification
20
broad histone mark
18
control
14
transcription factor
12
narrow histone mark
2
RNA binding protein
Date released
386
February, 2021
56
August, 2017
14
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
430
bam
419
bigWig
401
tsv
31
fastq
8
tagAlign
7
bed narrowPeak
5
bed bed3+
5
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
477
Homo sapiens
Biosample type
476
tissue
2
primary cell
Organ
891
pancreas
773
liver
671
connective tissue
507
epithelium
478
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
nerve
37
embryo
34
blood
34
bodily fluid
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
420
hg19
418
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.platform.term_name!
Illumina HiSeq 4000
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
9
1
1
omental fat pad
5
5
1
1
white adipose tissue
12
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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