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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 474total RNA-seq
  • 144ChIP-seq
  • 23ATAC-seq
  • 8DNase-seq
  • 6WGBS
  • 4pCHi-C
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RNA microarray
  • 1RRBS
Assay category
  • 481Transcription
  • 144DNA binding
  • 31DNA accessibility
  • 7DNA methylation
  • 13D chromatin structure
Target of assay
  • 78histone
  • 78histone modification
  • 44broad histone mark
  • 37transcription factor
  • 33narrow histone mark
  • 29control
  • 7RNA binding protein
  • 2chromatin remodeller
Date released
  • 455February, 2021
  • 124August, 2017
  • 18July, 2019
  • 18June, 2019
  • 14February, 2023
  • 14October, 2018
  • 6November, 2020
  • 5August, 2021
  • 4October, 2019
  • 2April, 2018
  • 2February, 2020
  • 2July, 2018
  • 2March, 2020
  • 2May, 2021
  • 1January, 2018
  • 1May, 2023
  • 1November, 2019
Available data
  • 581bam
  • 564bigWig
  • 478tsv
  • 88fastq
  • 69bed narrowPeak
  • 26bed bed3+
  • 23bigBed narrowPeak
  • 22tagAlign
  • 9bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 1hdf5
Organism
  • 670Homo sapiens
Biosample type
  • 535tissue
  • 96in vitro differentiated cells
  • 39primary cell
  • 1stem cell
Organ
  • 891pancreas
  • 773liver
  • 671connective tissue
  • 507epithelium
  • 478adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 34blood
  • 34bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 16spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 670AMP
  • 1T1D
Genome assembly (visualization)
  • 583hg19
  • 560GRCh38
Lab
  • 666AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
  • 1Kyle Gaulton, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

671 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RNA microarray
RRBS
tissue
adipose tissue3822331
bone tissue58
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue7911
omental fat pad5511
in vitro differentiated cells
adipocyte567811
chondrocyte5
immature adipocyte22
osteoblast11
preadipocyte11
primary cell
cardiac fibroblast531
osteoblast5211
mesenchymal stem cell7
pancreatic stellate cell4
brain pericyte11
stem cell
mesenchymal stem cell1
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