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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 537ChIP-seq
  • 189total RNA-seq
  • 22ATAC-seq
  • 5WGBS
  • 4DNase-seq
  • 4Hi-C
  • 3pCHi-C
  • 3small RNA-seq
  • 2RRBS
  • 2STARR-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 537DNA binding
  • 193Transcription
  • 26DNA accessibility
  • 7DNA methylation
  • 43D chromatin structure
  • 1DNA sequencing
Target of assay
  • 327transcription factor
  • 105control
  • 103histone modification
  • 102histone
  • 82recombinant protein
  • 60narrow histone mark
  • 55RNA binding protein
  • 42broad histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 305November, 2017
  • 194May, 2020
  • 59December, 2017
  • 53August, 2017
  • 50November, 2018
  • 40May, 2022
  • 35August, 2021
  • 10July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 3February, 2021
  • 3March, 2020
  • 2June, 2019
  • 1December, 2018
  • 1February, 2020
Available data
  • 663bam
  • 607bigWig
  • 447fastq
  • 426bed narrowPeak
  • 343bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 61bed broadPeak
  • 61bigBed broadPeak
  • 11bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 773Homo sapiens
Biosample type
  • 390cell line
  • 354tissue
  • 15in vitro differentiated cells
  • 14primary cell
Organ
  • 891pancreas
  • 773liver
  • 671connective tissue
  • 507epithelium
  • 478adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 34blood
  • 34bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 16spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 773AMP
Genome assembly (visualization)
  • 610hg19
  • 516GRCh38
Lab
  • 702AMP-T2D consortium
  • 40Karen Mohlke, UNC
  • 31Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

773 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG236714112221
tissue
liver145167203111111
right lobe of liver63112
in vitro differentiated cells
hepatocyte15
primary cell
hepatocyte4511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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