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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 375total RNA-seq
  • 207ChIP-seq
  • 133ATAC-seq
  • 79single cell RNA-seq
  • 51WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 9Hi-C
  • 6DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 456Transcription
  • 207DNA binding
  • 152DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 151histone
  • 151histone modification
  • 78broad histone mark
  • 73narrow histone mark
  • 49control
  • 12transcription factor
  • 6RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 156July, 2018
  • 80May, 2022
  • 72September, 2018
  • 61May, 2021
  • 56February, 2023
  • 55November, 2019
  • 42October, 2018
  • 39April, 2018
  • 32February, 2021
  • 18October, 2019
  • 14March, 2020
  • 11September, 2017
  • 10November, 2020
  • 8January, 2021
  • 7August, 2020
  • 6July, 2019
  • 5March, 2019
  • 5November, 2018
  • 4August, 2021
  • 4June, 2019
  • 4October, 2017
  • 3August, 2018
  • 3October, 2022
  • 3September, 2020
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 650bam
  • 612bigWig
  • 416fastq
  • 416tsv
  • 186bed narrowPeak
  • 82bigBed narrowPeak
  • 80zippedFastqFolder
  • 27bed bed3+
  • 19bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 5bigBed broadPeak
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 883Homo sapiens
Biosample type
  • 467tissue
  • 329primary cell
  • 92cell line
  • 3in vitro differentiated cells
Organ
  • 891pancreas
  • 773liver
  • 671connective tissue
  • 507epithelium
  • 478adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 61eye
  • 43nerve
  • 37embryo
  • 34blood
  • 34bodily fluid
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 16spleen
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 721AMP
  • 136HPAP
  • 34T1D
Genome assembly (visualization)
  • 629hg19
  • 624GRCh38
Lab
  • 710AMP-T2D consortium
  • 136Klaus Kaestner, Upenn
  • 27Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 81inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

891 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans27250406743111
body of pancreas3243222
pancreas2162412111
endocrine pancreas16
primary cell
pancreatic alpha cell37133511311
pancreatic beta cell20132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
pancreatic stellate cell4
co-expressing pancreatic endocrine cell2
unclassified pancreatic endocrine cell2
cell line
EndoC_BH13315196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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