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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 163ChIP-seq
  • 128total RNA-seq
  • 81ATAC-seq
  • 70single cell RNA-seq
  • 52WGBS
  • 48snATAC-seq
  • 6DNase-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 198Transcription
  • 163DNA binding
  • 135DNA accessibility
  • 52DNA methylation
  • 13D chromatin structure
Target of assay
  • 109transcription factor
  • 41control
  • 21RNA binding protein
  • 11chromatin remodeller
  • 10histone modification
  • 9histone
  • 6narrow histone mark
  • 3broad histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 158May, 2022
  • 107August, 2017
  • 45February, 2021
  • 44November, 2017
  • 41September, 2018
  • 37October, 2018
  • 36November, 2018
  • 33December, 2018
  • 22September, 2020
  • 13January, 2019
  • 7October, 2017
  • 4December, 2017
  • 1August, 2018
  • 1July, 2018
  • 1March, 2019
Available data
  • 416fastq
  • 344bam
  • 279bigWig
  • 168bed narrowPeak
  • 135bigBed narrowPeak
  • 135zippedFastqFolder
  • 129tsv
  • 8bed broadPeak
  • 6bigBed broadPeak
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 4bed bed3+
  • 2csv
  • 1bedpe bed3+
Organism
  • 550Homo sapiens
Biosample type
  • 248primary cell
  • 196tissue
  • 104cell line
  • 2in vitro differentiated cells
Organ
  • 264pancreas
  • 129epithelium
  • 80liver
  • 45blood
  • 45bodily fluid
  • 26connective tissue
  • 25adipose tissue
  • 16spleen
Project
  • 349AMP
  • 201HPAP
Genome assembly (visualization)
  • 292hg19
  • 276GRCh38
Lab
  • 323AMP-T2D consortium
  • 201Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina NextSeq 500
BIOSAMPLE
ASSAY

550 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
Hi-C
pCHi-C
primary cell
Langerhans cell6748
pancreatic alpha cell1025131
pancreatic beta cell101716
pancreatic acinar cell47
pancreatic ductal cell44
tissue
islet of Langerhans9520
body of pancreas13421
spleen1312
liver132
subcutaneous adipose tissue121
cell line
HepG252511
GM1287845
in vitro differentiated cells
adipocyte1
white fat cell1
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