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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1851
ChIP-seq
1525
total RNA-seq
512
ATAC-seq
333
single cell RNA-seq
208
DNase-seq
87
RNA microarray
85
snATAC-seq
73
WGBS
56
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1880
Transcription
1851
DNA binding
810
DNA accessibility
95
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Target of assay
1011
histone modification
1010
histone
512
narrow histone mark
508
transcription factor
497
broad histone mark
335
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
2
other context
2
other post-translational modification
Date released
715
February, 2021
408
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
155
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
56
September, 2020
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
26
April, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
10
December, 2019
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
1
July, 2025
Available data
3319
bam
3094
bigWig
1792
bed narrowPeak
1562
tsv
1269
fastq
1018
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
270
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Organism
4832
Homo sapiens
Biosample type
2742
tissue
1040
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
896
pancreas
791
liver
682
connective tissue
490
adipose tissue
435
epithelium
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
97
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
4219
AMP
314
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3150
hg19
3053
GRCh38
5
hg18
Lab
3838
AMP-T2D consortium
343
Kyle Gaulton, UCSD
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Audit category:
353
inconsistent ontology term
42
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
89
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
files.platform.term_name!
Illumina NextSeq 500
organ_slims!
spleen
BIOSAMPLE
ASSAY
4848 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP