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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • 3small RNA-seq
  • 2pCHi-C
  • 1DNase-seq
  • 1RNA microarray
Assay category
  • 401Transcription
  • 73DNA binding
  • 7DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 57August, 2017
  • 23October, 2018
  • 12July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 441bam
  • 424bigWig
  • 401tsv
  • 43fastq
  • 12bed narrowPeak
  • 9bigBed narrowPeak
  • 8tagAlign
  • 5bed bed3+
  • 2bed bedMethyl
  • 2bed broadPeak
  • 2bigBed bedMethyl
  • 1bedpe bed3+
  • 1bigBed broadPeak
Organism
  • 489Homo sapiens
Biosample type
  • 487tissue
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 896pancreas
  • 791liver
  • 682connective tissue
  • 490adipose tissue
  • 482epithelium
  • 393heart
  • 354kidney
  • 285brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 24spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 490AMP
Genome assembly (visualization)
  • 425hg19
  • 423GRCh38
Lab
  • 490AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
files.platform.term_name!
  • Illumina NextSeq 500
BIOSAMPLE
ASSAY

490 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
DNase-seq
RNA microarray
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue712111
omental fat pad511111
white adipose tissue12
primary cell
mesenchymal stem cell of adipose11
in vitro differentiated cells
white fat cell1
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