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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 20ChIP-seq
  • 1DNase-seq
Assay category
  • 20DNA binding
  • 1DNA accessibility
Target of assay
  • 8histone
  • 8histone modification
  • 7control
  • 5broad histone mark
  • 5transcription factor
  • 3RNA binding protein
  • 3narrow histone mark
Date released
  • 8August, 2017
  • 5November, 2017
  • 4October, 2017
  • 4September, 2017
Available data
  • 21fastq
  • 20bam
  • 14bigWig
  • 13bed narrowPeak
  • 8bigBed narrowPeak
  • 7bed broadPeak
  • 5bigBed broadPeak
  • 5tagAlign
  • 4bed bed3+
Organism
  • 21Homo sapiens
Biosample type
  • 13tissue
  • 3cell line
  • 3primary cell
  • 2in vitro differentiated cells
Organ
  • 7pancreas
  • 6brain
  • 5liver
  • 2connective tissue
  • 2epithelium
  • 2vasculature
  • 1blood vessel
Project
  • 21AMP
Genome assembly (visualization)
  • 14hg19
  • 11GRCh38
Lab
  • 21AMP-T2D consortium
Audit category:
  • 4missing controlled_by
Audit category:
  • 1inconsistent control read length
files.read_length!
  • 35
BIOSAMPLE
ASSAY

21 results

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Clear Filters
ChIP-seq
DNase-seq
tissue
islet of Langerhans7
brain4
liver2
cell line
HepG23
primary cell
brain microvascular endothelial cell1
choroid plexus epithelial cell1
skeletal muscle myoblast1
in vitro differentiated cells
adipocyte2
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