Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21ChIP-seq
  • 1DNase-seq
Assay category
  • 21DNA binding
  • 1DNA accessibility
Target of assay
  • 8control
  • 7histone
  • 7histone modification
  • 6transcription factor
  • 4broad histone mark
  • 3RNA binding protein
  • 2narrow histone mark
Date released
  • 9August, 2017
  • 5November, 2017
  • 4October, 2017
  • 4September, 2017
Available data
  • 22fastq
  • 21bam
  • 14bigWig
  • 13bed narrowPeak
  • 8bigBed narrowPeak
  • 7bed broadPeak
  • 5bigBed broadPeak
  • 5tagAlign
Organism
  • 22Homo sapiens
Biosample type
  • 10tissue
  • 6in vitro differentiated cells
  • 3cell line
  • 3primary cell
Organ
  • 6brain
  • 6connective tissue
  • 5pancreas
  • 4liver
  • 2epithelium
  • 2vasculature
  • 1blood vessel
Project
  • 22AMP
Genome assembly (visualization)
  • 14hg19
  • 11GRCh38
Lab
  • 22AMP-T2D consortium
Audit category:
  • 4missing controlled_by
Audit category:
  • 1inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

22 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
tissue
islet of Langerhans5
brain4
liver1
in vitro differentiated cells
adipocyte6
cell line
HepG23
primary cell
brain microvascular endothelial cell1
choroid plexus epithelial cell1
skeletal muscle myoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego