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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 127ChIP-seq
  • 9total RNA-seq
  • 4RRBS
Assay category
  • 127DNA binding
  • 9Transcription
  • 4DNA methylation
Target of assay
  • 52transcription factor
  • 46histone
  • 46histone modification
  • 29control
  • 23broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 58November, 2017
  • 42August, 2017
  • 33February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 140fastq
  • 135bam
  • 111bigWig
  • 92bed narrowPeak
  • 62bigBed narrowPeak
  • 51bed broadPeak
  • 51bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 140Homo sapiens
Biosample type
  • 61cell line
  • 36primary cell
  • 33in vitro differentiated cells
  • 10tissue
Organ
  • 64liver
  • 29pancreas
  • 26epithelium
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 140AMP
Genome assembly (visualization)
  • 115hg19
  • 96GRCh38
Lab
  • 140AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 13inconsistent control read length
files.platform.term_name!
  • Illumina Genome Analyzer II
BIOSAMPLE
ASSAY

140 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
cell line
HepG260
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast91
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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