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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 121ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 121DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 40histone
  • 40histone modification
  • 29control
  • 21broad histone mark
  • 19narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 56November, 2017
  • 39August, 2017
  • 33February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 135fastq
  • 130bam
  • 106bigWig
  • 87bed narrowPeak
  • 57bigBed narrowPeak
  • 46bed broadPeak
  • 46bigBed broadPeak
  • 9tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 135Homo sapiens
Biosample type
  • 59cell line
  • 33in vitro differentiated cells
  • 33primary cell
  • 10tissue
Organ
  • 62liver
  • 29pancreas
  • 26epithelium
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 135AMP
Genome assembly (visualization)
  • 110hg19
  • 90GRCh38
Lab
  • 135AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 11inconsistent control read length
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

135 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG258
GM128781
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast511
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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