Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 126ChIP-seq
  • 4RRBS
  • 1total RNA-seq
Assay category
  • 126DNA binding
  • 4DNA methylation
  • 1Transcription
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • 27control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 58November, 2017
  • 42August, 2017
  • 25February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1October, 2017
Available data
  • 131fastq
  • 126bam
  • 103bigWig
  • 93bed narrowPeak
  • 63bigBed narrowPeak
  • 52bed broadPeak
  • 52bigBed broadPeak
  • 16tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
  • 1tsv
Organism
  • 131Homo sapiens
Biosample type
  • 60cell line
  • 36primary cell
  • 25in vitro differentiated cells
  • 10tissue
Organ
  • 64liver
  • 29pancreas
  • 26epithelium
  • 9embryo
  • 2musculature of body
  • 1brain
Project
  • 131AMP
Genome assembly (visualization)
  • 107hg19
  • 89GRCh38
Lab
  • 131AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 14inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

131 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
RRBS
total RNA-seq
cell line
HepG260
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast91
in vitro differentiated cells
pancreatic endoderm9
endocrine cell31
definitive endodermal cell3
embryonic stem cell3
posterior foregut3
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego