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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 4RRBS
  • 3total RNA-seq
Assay category
  • 128DNA binding
  • 4DNA methylation
  • 3Transcription
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • 29control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 42August, 2017
  • 27February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 135fastq
  • 130bam
  • 106bigWig
  • 93bed narrowPeak
  • 63bigBed narrowPeak
  • 52bed broadPeak
  • 52bigBed broadPeak
  • 16tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
  • 3tsv
Organism
  • 135Homo sapiens
Biosample type
  • 62cell line
  • 36primary cell
  • 27in vitro differentiated cells
  • 10tissue
Organ
  • 65liver
  • 29pancreas
  • 26epithelium
  • 11embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 135AMP
Genome assembly (visualization)
  • 110hg19
  • 91GRCh38
Lab
  • 135AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 14inconsistent control read length
files.read_length!
  • 101
BIOSAMPLE
ASSAY

135 results

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Clear Filters
ChIP-seq
RRBS
total RNA-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast91
in vitro differentiated cells
pancreatic endoderm92
endocrine cell31
definitive endodermal cell3
embryonic stem cell3
posterior foregut3
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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