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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 124DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 43histone
  • 43histone modification
  • 29control
  • 24broad histone mark
  • 19narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 39August, 2017
  • 33February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 138fastq
  • 133bam
  • 109bigWig
  • 90bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 138Homo sapiens
Biosample type
  • 62cell line
  • 33in vitro differentiated cells
  • 33primary cell
  • 10tissue
Organ
  • 65liver
  • 25pancreas
  • 22epithelium
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 138AMP
Genome assembly (visualization)
  • 113hg19
  • 93GRCh38
Lab
  • 138AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 10inconsistent control read length
files.read_length!
  • 44
BIOSAMPLE
ASSAY

138 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast911
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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