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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 120ChIP-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 120DNA binding
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 51transcription factor
  • 40histone
  • 40histone modification
  • 29control
  • 23broad histone mark
  • 17narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 37August, 2017
  • 22February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 125fastq
  • 120bam
  • 96bigWig
  • 88bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bed bed3+
Organism
  • 125Homo sapiens
Biosample type
  • 62cell line
  • 33primary cell
  • 22in vitro differentiated cells
  • 8tissue
Organ
  • 65liver
  • 23pancreas
  • 22epithelium
  • 9embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 125AMP
Genome assembly (visualization)
  • 100hg19
  • 80GRCh38
Lab
  • 125AMP-T2D consortium
Audit category:
  • 1missing controlled_by
Audit category:
  • 8inconsistent control read length
BIOSAMPLE
ASSAY

125 results

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Clear Filters
ChIP-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell11
pancreatic beta cell11
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm9
embryonic stem cell3
endocrine cell3
posterior foregut3
primitive gut cell3
tissue
liver31
skeletal muscle tissue2
brain1
islet of Langerhans1
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