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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 69DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 40histone
  • 40histone modification
  • 24control
  • 20broad histone mark
  • 20narrow histone mark
  • 5transcription factor
  • 3RNA binding protein
Date released
  • November, 2017
  • 43August, 2017
  • 33February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 83fastq
  • 79bam
  • 56bigWig
  • 43bed narrowPeak
  • 13bigBed narrowPeak
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 9tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 83Homo sapiens
Biosample type
  • 37primary cell
  • 33in vitro differentiated cells
  • 10tissue
  • 3cell line
Organ
  • 29pancreas
  • 26epithelium
  • 12embryo
  • 6liver
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 83AMP
Genome assembly (visualization)
  • 60hg19
  • 54GRCh38
Lab
  • 83AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

83 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
cell line
HepG22
GM128781
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