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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 119ChIP-seq
  • 6total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 119DNA binding
  • 6Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 41histone
  • 41histone modification
  • 26control
  • 21broad histone mark
  • 20narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 43August, 2017
  • 21February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 130fastq
  • 125bam
  • 104bigWig
  • 88bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 6tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 130Homo sapiens
Biosample type
  • 62cell line
  • 37primary cell
  • 21in vitro differentiated cells
  • 10tissue
Organ
  • 65liver
  • 29pancreas
  • 26epithelium
  • embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 130AMP
Genome assembly (visualization)
  • 108hg19
  • 88GRCh38
Lab
  • 130AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 14inconsistent control read length
organ_slims!
  • embryo
BIOSAMPLE
ASSAY

130 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primitive gut cell31
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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