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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
9
total RNA-seq
4
RRBS
1
DNase-seq
Assay category
102
DNA binding
9
Transcription
4
DNA methylation
1
DNA accessibility
Target of assay
52
transcription factor
33
histone
33
histone modification
18
broad histone mark
17
control
15
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
33
February, 2018
17
August, 2017
3
December, 2017
2
November, 2018
1
January, 2019
1
October, 2017
Available data
116
fastq
111
bam
99
bigWig
80
bed narrowPeak
64
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
16
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
Organism
116
Homo sapiens
Biosample type
62
cell line
33
in vitro differentiated cells
11
primary cell
10
tissue
Organ
65
liver
29
pancreas
epithelium
12
embryo
2
musculature of body
1
blood
1
bodily fluid
1
brain
Project
116
AMP
Genome assembly (visualization)
103
hg19
83
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
10
inconsistent control read length
organ_slims!
epithelium
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG2
61
GM12878
1
in vitro differentiated cells
pancreatic endoderm
9
3
endocrine cell
3
2
definitive endodermal cell
3
1
embryonic stem cell
3
1
posterior foregut
3
1
+ See 1 more…
primary cell
skeletal muscle myoblast
9
1
1
tissue
liver
3
1
islet of Langerhans
3
skeletal muscle tissue
2
brain
1
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