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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 99DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 51transcription factor
  • 31histone
  • 31histone modification
  • 17broad histone mark
  • 17control
  • 14narrow histone mark
  • 6RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 33February, 2018
  • 14August, 2017
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 113fastq
  • 108bam
  • 96bigWig
  • 80bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 113Homo sapiens
Biosample type
  • 62cell line
  • 33in vitro differentiated cells
  • 11primary cell
  • 7tissue
Organ
  • 65liver
  • pancreas
  • 26epithelium
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 113AMP
Genome assembly (visualization)
  • 100hg19
  • 80GRCh38
Lab
  • 113AMP-T2D consortium
Audit category:
  • 10inconsistent control read length
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

113 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
primary cell
skeletal muscle myoblast911
tissue
liver31
skeletal muscle tissue2
brain1
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