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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 122DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 49transcription factor
  • 45histone
  • 45histone modification
  • 28control
  • 23broad histone mark
  • 22narrow histone mark
  • 5RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 40August, 2017
  • 33February, 2018
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 136fastq
  • 131bam
  • 108bigWig
  • 92bed narrowPeak
  • 62bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 16tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 136Homo sapiens
Biosample type
  • 62cell line
  • 37primary cell
  • 33in vitro differentiated cells
  • 4tissue
Organ
  • 62liver
  • 26epithelium
  • 26pancreas
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 136AMP
Genome assembly (visualization)
  • 112hg19
  • 92GRCh38
Lab
  • 136AMP-T2D consortium
Audit category:
  • 14inconsistent control read length
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG261
GM128781
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
tissue
skeletal muscle tissue2
brain1
liver1
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