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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
4
RRBS
1
DNase-seq
Assay category
78
DNA binding
4
DNA methylation
1
DNA accessibility
Target of assay
52
transcription factor
17
histone
17
histone modification
10
broad histone mark
9
control
7
RNA binding protein
7
narrow histone mark
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
18
August, 2017
3
December, 2017
2
November, 2018
1
January, 2019
Available data
83
fastq
78
bam
74
bigWig
64
bed narrowPeak
64
bigBed narrowPeak
53
bed broadPeak
53
bigBed broadPeak
16
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed bed3+
Organism
83
Homo sapiens
Biosample type
62
cell line
12
primary cell
9
tissue
Organ
65
liver
4
pancreas
2
musculature of body
1
blood
1
bodily fluid
1
epithelium
Project
83
AMP
Genome assembly (visualization)
78
hg19
58
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
8
inconsistent control read length
replication_type!
unreplicated
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
RRBS
DNase-seq
cell line
HepG2
61
GM12878
1
primary cell
skeletal muscle myoblast
9
1
1
pancreatic beta cell
1
tissue
liver
3
1
islet of Langerhans
3
skeletal muscle tissue
2
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