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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 104ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 104DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • 29control
  • broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 55November, 2017
  • 31August, 2017
  • 25February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 118fastq
  • 113bam
  • 89bigWig
  • 72bed narrowPeak
  • 56bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 9tsv
  • 7tagAlign
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed bed3+
Organism
  • 118Homo sapiens
Biosample type
  • 58cell line
  • 26primary cell
  • 25in vitro differentiated cells
  • 9tissue
Organ
  • 61liver
  • 22pancreas
  • 20epithelium
  • 9embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 118AMP
Genome assembly (visualization)
  • 93hg19
  • 74GRCh38
Lab
  • 118AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 9inconsistent control read length
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

118 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG257
GM128781
primary cell
pancreatic alpha cell10
pancreatic beta cell10
skeletal muscle myoblast411
in vitro differentiated cells
pancreatic endoderm63
endocrine cell22
definitive endodermal cell21
embryonic stem cell21
posterior foregut21
tissue
liver31
islet of Langerhans2
skeletal muscle tissue2
brain1
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