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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 99ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 99DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 54November, 2017
  • 30August, 2017
  • 25February, 2018
  • 2December, 2017
  • 2November, 2018
Available data
  • 113fastq
  • 108bam
  • 108bigWig
  • 94bed narrowPeak
  • 64bigBed narrowPeak
  • 53bed broadPeak
  • 53bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed bed3+
Organism
  • 113Homo sapiens
Biosample type
  • 56cell line
  • 25in vitro differentiated cells
  • 24primary cell
  • 8tissue
Organ
  • 59liver
  • 17pancreas
  • 14epithelium
  • 9embryo
  • 2musculature of body
Project
  • 113AMP
Genome assembly (visualization)
  • 112hg19
  • 97GRCh38
Lab
  • 113AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 14inconsistent control read length
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

113 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG256
in vitro differentiated cells
pancreatic endoderm63
endocrine cell22
definitive endodermal cell21
embryonic stem cell21
posterior foregut21
primary cell
skeletal muscle myoblast811
pancreatic alpha cell7
pancreatic beta cell7
tissue
islet of Langerhans3
liver21
skeletal muscle tissue2
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