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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 81DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 47histone
  • histone modification
  • 29control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 52November, 2017
  • 19August, 2017
  • 17February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 95fastq
  • 90bam
  • 66bigWig
  • 51bed narrowPeak
  • 51bigBed narrowPeak
  • 38bed broadPeak
  • 38bigBed broadPeak
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1bed bed3+
  • 1tagAlign
Organism
  • 95Homo sapiens
Biosample type
  • 55cell line
  • 17in vitro differentiated cells
  • 15primary cell
  • 8tissue
Organ
  • 58liver
  • 13pancreas
  • 12epithelium
  • 6embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 95AMP
Genome assembly (visualization)
  • 70hg19
  • 52GRCh38
Lab
  • 95AMP-T2D consortium
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent control read length
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

95 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG254
GM128781
in vitro differentiated cells
pancreatic endoderm33
endocrine cell12
definitive endodermal cell11
embryonic stem cell11
posterior foregut11
primary cell
pancreatic alpha cell6
pancreatic beta cell6
skeletal muscle myoblast111
tissue
liver31
skeletal muscle tissue2
brain1
islet of Langerhans1
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