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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 105ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 105DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • 52transcription factor
  • 47histone
  • 47histone modification
  • 29control
  • 24broad histone mark
  • narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 56November, 2017
  • 31August, 2017
  • 25February, 2018
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 119fastq
  • 114bam
  • 90bigWig
  • 73bed narrowPeak
  • 59bigBed narrowPeak
  • 47bed broadPeak
  • 47bigBed broadPeak
  • 10tagAlign
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed bed3+
Organism
  • 119Homo sapiens
Biosample type
  • 59cell line
  • 26primary cell
  • 25in vitro differentiated cells
  • 9tissue
Organ
  • 62liver
  • 20pancreas
  • 18epithelium
  • 9embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 119AMP
Genome assembly (visualization)
  • 94hg19
  • 75GRCh38
Lab
  • 119AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 6inconsistent control read length
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

119 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
cell line
HepG258
GM128781
primary cell
pancreatic alpha cell9
pancreatic beta cell9
skeletal muscle myoblast611
in vitro differentiated cells
pancreatic endoderm63
endocrine cell22
definitive endodermal cell21
embryonic stem cell21
posterior foregut21
tissue
liver31
islet of Langerhans2
skeletal muscle tissue2
brain1
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