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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 76ChIP-seq
  • 9total RNA-seq
  • 4RRBS
  • 1DNase-seq
Assay category
  • 76DNA binding
  • 9Transcription
  • 4DNA methylation
  • 1DNA accessibility
Target of assay
  • transcription factor
  • 47histone
  • 47histone modification
  • 29control
  • 24broad histone mark
  • 23narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 42August, 2017
  • 33February, 2018
  • 12November, 2017
  • 1December, 2017
  • 1January, 2019
  • 1October, 2017
Available data
  • 90fastq
  • 86bam
  • 62bigWig
  • 44bed narrowPeak
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 16tagAlign
  • 14bigBed narrowPeak
  • 9tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bed bed3+
Organism
  • 90Homo sapiens
Biosample type
  • 37primary cell
  • 33in vitro differentiated cells
  • 13cell line
  • 7tissue
Organ
  • 28pancreas
  • 26epithelium
  • 14liver
  • 12embryo
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 90AMP
Genome assembly (visualization)
  • 66hg19
  • 54GRCh38
Lab
  • 90AMP-T2D consortium
Audit category:
  • 2missing controlled_by
Audit category:
  • 13inconsistent control read length
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

90 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
primary cell
pancreatic alpha cell13
pancreatic beta cell13
skeletal muscle myoblast911
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
cell line
HepG212
GM128781
tissue
islet of Langerhans2
liver11
skeletal muscle tissue2
brain1
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