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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 374ChIP-seq
  • 128total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 374DNA binding
  • 155Transcription
  • 21DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 74control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 172November, 2017
  • 149August, 2017
  • 72September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 11January, 2019
  • 8October, 2017
  • 6February, 2018
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 551fastq
  • 549bam
  • 472bigWig
  • 282bed narrowPeak
  • 243bigBed narrowPeak
  • 155tsv
  • 16bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 9bigBed broadPeak
Organism
  • 545Homo sapiens
Biosample type
  • 225cell line
  • 203tissue
  • 114primary cell
  • 9in vitro differentiated cells
Organ
  • 261liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 15blood
  • 15bodily fluid
  • 6spleen
  • 5brain
  • 1embryo
Project
  • 551AMP
Genome assembly (visualization)
  • 470hg19
  • 469GRCh38
Lab
  • 550AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

551 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220451
GM1287815
tissue
islet of Langerhans6891
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
adipocyte21
definitive endodermal cell1
embryonic stem cell1
islet precursor cell1
pancreatic endoderm1
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