Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 365ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 365DNA binding
  • 163Transcription
  • 21DNA accessibility
  • 13D chromatin structure
Target of assay
  • 220transcription factor
  • 82recombinant protein
  • 75control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 17RNA binding protein
  • 7chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 168November, 2017
  • 150August, 2017
  • 72September, 2018
  • 43November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 550fastq
  • 548bam
  • 472bigWig
  • 273bed narrowPeak
  • 234bigBed narrowPeak
  • 163tsv
  • 16bed broadPeak
  • 13bed bed3+
  • 11tagAlign
  • 9bigBed broadPeak
Organism
  • 544Homo sapiens
Biosample type
  • 216cell line
  • 202tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 250liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 550AMP
Genome assembly (visualization)
  • 470hg19
  • 467GRCh38
Lab
  • 549AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

550 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG219451
GM1287816
tissue
islet of Langerhans6891
liver50
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego