Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
318
ChIP-seq
122
total RNA-seq
27
single cell RNA-seq
15
ATAC-seq
4
DNase-seq
1
Hi-C
Assay category
318
DNA binding
149
Transcription
19
DNA accessibility
1
3D chromatin structure
Target of assay
179
transcription factor
82
recombinant protein
69
histone
69
histone modification
68
control
38
broad histone mark
31
narrow histone mark
20
RNA binding protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
143
August, 2017
143
November, 2017
72
September, 2018
41
November, 2018
35
December, 2017
25
July, 2018
10
January, 2019
10
October, 2018
5
October, 2017
1
August, 2018
1
December, 2018
1
June, 2018
Available data
487
fastq
485
bam
415
bigWig
237
bed narrowPeak
201
bigBed narrowPeak
149
tsv
17
bed broadPeak
12
bed bed3+
11
tagAlign
10
bigBed broadPeak
Organism
481
Homo sapiens
Biosample type
186
tissue
183
cell line
115
primary cell
3
in vitro differentiated cells
Organ
229
liver
214
pancreas
78
epithelium
20
connective tissue
15
adipose tissue
6
spleen
5
blood
5
bodily fluid
5
brain
Project
487
AMP
Genome assembly (visualization)
413
hg19
410
GRCh38
Lab
486
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
Audit category:
56
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.read_length!
100
BIOSAMPLE
ASSAY
487 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
6
89
1
liver
50
1
pancreas
13
spleen
6
brain
4
1
+ See 4 more…
cell line
HepG2
172
5
1
GM12878
5
primary cell
pancreatic ductal cell
13
4
2
4
pancreatic endocrine cell
23
pancreatic acinar cell
8
4
4
3
pancreatic beta cell
10
2
4
pancreatic alpha cell
10
1
3
+ See 10 more…
in vitro differentiated cells
adipocyte
2
1
See all biosamples
Download