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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 318ChIP-seq
  • 122total RNA-seq
  • 27single cell RNA-seq
  • 15ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 318DNA binding
  • 149Transcription
  • 19DNA accessibility
  • 13D chromatin structure
Target of assay
  • 179transcription factor
  • 82recombinant protein
  • 69histone
  • 69histone modification
  • 68control
  • 38broad histone mark
  • 31narrow histone mark
  • 20RNA binding protein
  • 7chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 143August, 2017
  • 143November, 2017
  • 72September, 2018
  • 41November, 2018
  • 35December, 2017
  • 25July, 2018
  • 10January, 2019
  • 10October, 2018
  • 5October, 2017
  • 1August, 2018
  • 1December, 2018
  • 1June, 2018
Available data
  • 487fastq
  • 485bam
  • 415bigWig
  • 237bed narrowPeak
  • 201bigBed narrowPeak
  • 149tsv
  • 17bed broadPeak
  • 12bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 481Homo sapiens
Biosample type
  • 186tissue
  • 183cell line
  • 115primary cell
  • 3in vitro differentiated cells
Organ
  • 229liver
  • 214pancreas
  • 78epithelium
  • 20connective tissue
  • 15adipose tissue
  • 6spleen
  • 5blood
  • 5bodily fluid
  • 5brain
Project
  • 487AMP
Genome assembly (visualization)
  • 413hg19
  • 410GRCh38
Lab
  • 486AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 56missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 100
BIOSAMPLE
ASSAY

487 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans6891
liver501
pancreas13
spleen6
brain41
cell line
HepG217251
GM128785
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
adipocyte21
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