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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 369ChIP-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 13total RNA-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 369DNA binding
  • 40Transcription
  • 21DNA accessibility
  • 13D chromatin structure
Target of assay
  • 222transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 171November, 2017
  • 57August, 2017
  • 49November, 2018
  • 46September, 2018
  • 35December, 2017
  • 25July, 2018
  • 15October, 2018
  • 12January, 2019
  • 8February, 2018
  • 8October, 2017
  • 3December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 431fastq
  • 429bam
  • 351bigWig
  • 278bed narrowPeak
  • 239bigBed narrowPeak
  • 40tsv
  • 16bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 9bigBed broadPeak
Organism
  • 425Homo sapiens
Biosample type
  • 223cell line
  • 111tissue
  • 86primary cell
  • 11in vitro differentiated cells
Organ
  • 260liver
  • 102pancreas
  • 50epithelium
  • 29connective tissue
  • 24adipose tissue
  • 14blood
  • 14bodily fluid
  • 6spleen
  • 5brain
  • 3embryo
Project
  • 431AMP
Genome assembly (visualization)
  • 349hg19
  • 347GRCh38
Lab
  • 430AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 60missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 101
BIOSAMPLE
ASSAY

431 results

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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
cell line
HepG220351
GM1287814
tissue
liver501
pancreas13
subcutaneous adipose tissue9
white adipose tissue9
islet of Langerhans61
primary cell
pancreatic endocrine cell23
pancreatic ductal cell1324
pancreatic acinar cell843
pancreatic beta cell24
pancreatic alpha cell13
in vitro differentiated cells
adipocyte21
pancreatic endoderm3
definitive endodermal cell1
embryonic stem cell1
islet precursor cell1
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