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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 353ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 1Hi-C
Assay category
  • 353DNA binding
  • 163Transcription
  • 18DNA accessibility
  • 13D chromatin structure
Target of assay
  • 226transcription factor
  • 82recombinant protein
  • 69control
  • 56histone
  • 56histone modification
  • 29broad histone mark
  • 27narrow histone mark
  • 24RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 168November, 2017
  • 136August, 2017
  • 72September, 2018
  • 47November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 11January, 2019
  • 4December, 2018
  • 4October, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 535fastq
  • 533bam
  • 461bigWig
  • 263bed narrowPeak
  • 224bigBed narrowPeak
  • 163tsv
  • 12bed bed3+
  • 5bed broadPeak
  • 4bigBed broadPeak
Organism
  • 535Homo sapiens
Biosample type
  • 220cell line
  • 186tissue
  • 113primary cell
  • 16in vitro differentiated cells
Organ
  • 255liver
  • 210pancreas
  • 78epithelium
  • 29connective tissue
  • 25adipose tissue
  • 15blood
  • 15bodily fluid
  • 6spleen
  • 4embryo
Project
  • 535AMP
Genome assembly (visualization)
  • 459hg19
  • 458GRCh38
Lab
  • 534AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 6inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

535 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
cell line
HepG219951
GM1287815
tissue
islet of Langerhans6891
liver50
white adipose tissue12
subcutaneous adipose tissue9
spleen6
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte2
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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