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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 268ChIP-seq
  • 131total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
Assay category
  • 268DNA binding
  • 158Transcription
  • 22DNA accessibility
Target of assay
  • 163transcription factor
  • 70recombinant protein
  • 61histone
  • 61histone modification
  • 42control
  • 31broad histone mark
  • 30narrow histone mark
  • 25RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 139August, 2017
  • 120November, 2017
  • 72September, 2018
  • 46November, 2018
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 8October, 2017
  • 3December, 2018
  • 2January, 2019
  • 1August, 2018
  • 1June, 2018
Available data
  • 448fastq
  • 447bam
  • 403bigWig
  • 216bed narrowPeak
  • 177bigBed narrowPeak
  • 158tsv
  • 13bed broadPeak
  • 12bed bed3+
  • 11tagAlign
  • 6bigBed broadPeak
Organism
  • 442Homo sapiens
Biosample type
  • 163cell line
  • 153tissue
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 215pancreas
  • 159liver
  • 78epithelium
  • 30connective tissue
  • 25adipose tissue
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 448AMP
Genome assembly (visualization)
  • 403GRCh38
  • 401hg19
Lab
  • 447AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 61missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 50
BIOSAMPLE
ASSAY

448 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2152
GM1287811
tissue
islet of Langerhans6891
white adipose tissue10
pancreas9
subcutaneous adipose tissue9
liver61
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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