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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 333ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 333DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 227transcription factor
  • 82recombinant protein
  • 76control
  • 28histone
  • 28histone modification
  • 26RNA binding protein
  • 19broad histone mark
  • 9chromatin remodeller
  • 9narrow histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 138August, 2017
  • 50November, 2018
  • 41September, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 519fastq
  • 517bam
  • 439bigWig
  • 252bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 11bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 513Homo sapiens
Biosample type
  • 227cell line
  • 200tissue
  • 75primary cell
  • 17in vitro differentiated cells
Organ
  • 262liver
  • 176pancreas
  • 57epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 519AMP
Genome assembly (visualization)
  • 437hg19
  • 434GRCh38
Lab
  • 518AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 20missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
files.read_length!
  • 51
BIOSAMPLE
ASSAY

519 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans3891
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic beta cell1024
pancreatic alpha cell1013
pancreatic acinar cell443
pancreatic ductal cell424
pancreatic endocrine cell4
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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