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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 275ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 275DNA binding
  • 163Transcription
  • 22DNA accessibility
  • 13D chromatin structure
Target of assay
  • 142transcription factor
  • 68histone
  • 68histone modification
  • 63control
  • 38broad histone mark
  • 30narrow histone mark
  • 26RNA binding protein
  • 12recombinant protein
  • 8chromatin remodeller
Date released
  • 149August, 2017
  • 104November, 2017
  • 72September, 2018
  • 35December, 2017
  • 27November, 2018
  • 25July, 2018
  • 14February, 2018
  • 12January, 2019
  • 9October, 2018
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 461fastq
  • 459bam
  • 395bigWig
  • 196bed narrowPeak
  • 163tsv
  • 157bigBed narrowPeak
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 455Homo sapiens
Biosample type
  • 189tissue
  • 141cell line
  • 114primary cell
  • 17in vitro differentiated cells
Organ
  • 219pancreas
  • 176liver
  • 78epithelium
  • 24connective tissue
  • 19adipose tissue
  • 16blood
  • 16bodily fluid
  • 5brain
  • 4embryo
Project
  • 461AMP
Genome assembly (visualization)
  • 396hg19
  • 390GRCh38
Lab
  • 460AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 1inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

461 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans6891
liver501
pancreas13
white adipose tissue12
body of pancreas23
cell line
HepG211951
GM1287816
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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