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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 23ChIP-seq
  • 4DNase-seq
Assay category
  • 23DNA binding
  • 4DNA accessibility
Target of assay
  • 13histone
  • 13histone modification
  • 9broad histone mark
  • 7control
  • 4narrow histone mark
  • 3chromatin remodeller
  • 3transcription factor
  • 2RNA binding protein
Date released
  • 14August, 2017
  • 5November, 2017
  • 4October, 2017
  • 3November, 2018
  • 1January, 2019
Available data
  • 27bam
  • 27fastq
  • 21bigWig
  • 20bed narrowPeak
  • 20bigBed narrowPeak
  • 12bed broadPeak
  • 11tagAlign
  • 6bigBed broadPeak
  • 2bed bed3+
Organism
  • 21Homo sapiens
Biosample type
  • 17tissue
  • 7cell line
  • 2primary cell
  • 1in vitro differentiated cells
Organ
  • 9pancreas
  • 7liver
  • 5brain
  • 3connective tissue
  • 2adipose tissue
  • 1blood
  • 1bodily fluid
Project
  • 27AMP
Genome assembly (visualization)
  • 21hg19
  • 19GRCh38
Lab
  • 27AMP-T2D consortium
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

27 results

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Clear Filters
ChIP-seq
DNase-seq
tissue
pancreas9
brain41
adipose tissue2
liver1
cell line
HepG26
GM128781
primary cell
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
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