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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 108ChIP-seq
  • 5total RNA-seq
  • 1Hi-C
Assay category
  • 108DNA binding
  • 5Transcription
  • 13D chromatin structure
Target of assay
  • 66transcription factor
  • 34control
  • 12recombinant protein
  • 8histone
  • 8histone modification
  • 7broad histone mark
  • 3chromatin remodeller
  • 1RNA binding protein
  • 1narrow histone mark
Date released
  • 53November, 2017
  • 35December, 2017
  • 11August, 2017
  • 10January, 2019
  • 4November, 2018
  • 1December, 2018
Available data
  • 114fastq
  • 113bam
  • 79bigWig
  • 67bed narrowPeak
  • 67bigBed narrowPeak
  • 5tsv
  • 4bed broadPeak
  • 4bigBed broadPeak
  • 2bed bed3+
Organism
  • 114Homo sapiens
Biosample type
  • 64cell line
  • 50tissue
Organ
  • 103liver
  • 5blood
  • 5bodily fluid
  • 4pancreas
  • 2adipose tissue
  • 2connective tissue
Project
  • 114AMP
Genome assembly (visualization)
  • 79hg19
  • 74GRCh38
Lab
  • 114AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 2missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

114 results

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ChIP-seq
total RNA-seq
Hi-C
cell line
HepG25351
GM128785
tissue
liver44
pancreas4
white adipose tissue2
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