Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 304ChIP-seq
  • 27single cell RNA-seq
  • 14total RNA-seq
  • 1DNase-seq
Assay category
  • 304DNA binding
  • 41Transcription
  • 1DNA accessibility
Target of assay
  • 183transcription factor
  • 82recombinant protein
  • 65histone
  • 65histone modification
  • 54control
  • 37broad histone mark
  • 28narrow histone mark
  • 20RNA binding protein
  • 7chromatin remodeller
Date released
  • 143November, 2017
  • 52August, 2017
  • 35December, 2017
  • 34November, 2018
  • 32September, 2018
  • 25July, 2018
  • 14February, 2018
  • 5January, 2019
  • 4October, 2017
  • 1August, 2018
  • 1June, 2018
Available data
  • 346bam
  • 346fastq
  • 289bigWig
  • 213bed narrowPeak
  • 180bigBed narrowPeak
  • 41tsv
  • 13bed bed3+
  • 13bed broadPeak
  • 11tagAlign
  • 7bigBed broadPeak
Organism
  • 340Homo sapiens
Biosample type
  • 177cell line
  • 82tissue
  • 71primary cell
  • 16in vitro differentiated cells
Organ
  • 216liver
  • 82pancreas
  • 36epithelium
  • 18connective tissue
  • 14adipose tissue
  • 5blood
  • 5bodily fluid
  • 5brain
  • 4embryo
Project
  • 346AMP
Genome assembly (visualization)
  • 287hg19
  • 285GRCh38
Lab
  • 346AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

346 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
cell line
HepG2172
GM128785
tissue
liver44
pancreas13
white adipose tissue12
islet of Langerhans6
brain41
primary cell
pancreatic endocrine cell23
pancreatic ductal cell132
pancreatic acinar cell84
co-expressing pancreatic endocrine cell2
endothelial cell2
in vitro differentiated cells
pancreatic endoderm4
adipocyte2
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego