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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
71
ChIP-seq
18
ATAC-seq
2
DNase-seq
1
Hi-C
Assay category
122
Transcription
71
DNA binding
20
DNA accessibility
1
3D chromatin structure
Target of assay
46
transcription factor
22
control
6
RNA binding protein
3
histone
3
histone modification
3
other context
3
other post-translational modification
2
chromatin remodeller
2
narrow histone mark
1
broad histone mark
Date released
96
August, 2017
40
September, 2018
30
November, 2017
17
October, 2018
16
November, 2018
7
January, 2019
4
December, 2018
4
October, 2017
Available data
214
fastq
212
bam
191
bigWig
122
tsv
68
bed narrowPeak
62
bigBed narrowPeak
3
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
Organism
214
Homo sapiens
Biosample type
121
tissue
50
cell line
42
primary cell
1
in vitro differentiated cells
Organ
137
pancreas
46
liver
42
epithelium
14
connective tissue
13
adipose tissue
11
blood
11
bodily fluid
6
spleen
Project
214
AMP
Genome assembly (visualization)
191
GRCh38
191
hg19
Lab
213
AMP-T2D consortium
1
Stephen Parker, UMich
files.run_type!
single-ended
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
89
1
subcutaneous adipose tissue
9
liver
6
1
spleen
6
body of pancreas
2
3
+ See 1 more…
cell line
HepG2
5
33
1
GM12878
11
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
pancreatic acinar cell
4
3
in vitro differentiated cells
adipocyte
1
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