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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
72
ChIP-seq
18
ATAC-seq
3
DNase-seq
1
Hi-C
Assay category
122
Transcription
72
DNA binding
21
DNA accessibility
1
3D chromatin structure
Target of assay
46
transcription factor
22
control
6
RNA binding protein
4
histone
4
histone modification
3
narrow histone mark
3
other context
3
other post-translational modification
2
chromatin remodeller
1
broad histone mark
Date released
98
August, 2017
40
September, 2018
30
November, 2017
17
October, 2018
16
November, 2018
7
January, 2019
4
December, 2018
4
October, 2017
Available data
216
fastq
214
bam
193
bigWig
122
tsv
70
bed narrowPeak
64
bigBed narrowPeak
4
bed broadPeak
3
bigBed broadPeak
1
bed bed3+
Organism
216
Homo sapiens
Biosample type
121
tissue
50
cell line
44
primary cell
1
in vitro differentiated cells
Organ
137
pancreas
46
liver
42
epithelium
14
connective tissue
13
adipose tissue
11
blood
11
bodily fluid
6
spleen
Project
216
AMP
Genome assembly (visualization)
193
hg19
192
GRCh38
Lab
215
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
89
1
subcutaneous adipose tissue
9
liver
6
1
spleen
6
body of pancreas
2
3
+ See 1 more…
cell line
HepG2
5
33
1
GM12878
11
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
pancreatic acinar cell
4
3
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
1
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