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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 122total RNA-seq
  • 72ChIP-seq
  • 18ATAC-seq
  • 3DNase-seq
  • 1Hi-C
Assay category
  • 122Transcription
  • 72DNA binding
  • 21DNA accessibility
  • 13D chromatin structure
Target of assay
  • 46transcription factor
  • 22control
  • 6RNA binding protein
  • 4histone
  • 4histone modification
  • 3narrow histone mark
  • 3other context
  • 3other post-translational modification
  • 2chromatin remodeller
  • 1broad histone mark
Date released
  • 98August, 2017
  • 40September, 2018
  • 30November, 2017
  • 17October, 2018
  • 16November, 2018
  • 7January, 2019
  • 4December, 2018
  • 4October, 2017
Available data
  • 216fastq
  • 214bam
  • 193bigWig
  • 122tsv
  • 70bed narrowPeak
  • 64bigBed narrowPeak
  • 4bed broadPeak
  • 3bigBed broadPeak
  • 1bed bed3+
Organism
  • 216Homo sapiens
Biosample type
  • 121tissue
  • 50cell line
  • 44primary cell
  • 1in vitro differentiated cells
Organ
  • 137pancreas
  • 46liver
  • 42epithelium
  • 14connective tissue
  • 13adipose tissue
  • 11blood
  • 11bodily fluid
  • 6spleen
Project
  • 216AMP
Genome assembly (visualization)
  • 193hg19
  • 192GRCh38
Lab
  • 215AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent assembly
  • 1inconsistent control read length
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

216 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans891
subcutaneous adipose tissue9
liver61
spleen6
body of pancreas23
cell line
HepG25331
GM1287811
primary cell
pancreatic beta cell104
pancreatic alpha cell103
pancreatic ductal cell44
pancreatic acinar cell43
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
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