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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 317ChIP-seq
  • 47total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 2DNase-seq
  • 1Hi-C
Assay category
  • 317DNA binding
  • 74Transcription
  • 20DNA accessibility
  • 13D chromatin structure
Target of assay
  • 211transcription factor
  • 82recombinant protein
  • 68control
  • 36histone
  • 36histone modification
  • 26RNA binding protein
  • 21broad histone mark
  • 15narrow histone mark
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • August, 2017
  • 72September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 412fastq
  • 410bam
  • 340bigWig
  • 260bed narrowPeak
  • 225bigBed narrowPeak
  • 74tsv
  • 10bed broadPeak
  • 8bigBed broadPeak
  • 5tagAlign
  • 2bed bed3+
Organism
  • 412Homo sapiens
Biosample type
  • 227cell line
  • 101primary cell
  • 70tissue
  • 14in vitro differentiated cells
Organ
  • 251liver
  • 99pancreas
  • 78epithelium
  • 16blood
  • 16bodily fluid
  • 15connective tissue
  • 13adipose tissue
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 412AMP
Genome assembly (visualization)
  • 337hg19
  • 335GRCh38
Lab
  • 411AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 33missing controlled_by
Audit category:
  • 6inconsistent control read length
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

412 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
primary cell
pancreatic ductal cell13424
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
pancreatic endocrine cell11
tissue
liver391
subcutaneous adipose tissue9
spleen6
body of pancreas23
brain41
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primitive gut cell2
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