Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 328ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 2DNase-seq
  • 1Hi-C
Assay category
  • 328DNA binding
  • 163Transcription
  • 20DNA accessibility
  • 13D chromatin structure
Target of assay
  • 185transcription factor
  • 72control
  • 69histone
  • 69histone modification
  • 66recombinant protein
  • 38broad histone mark
  • 31narrow histone mark
  • 15RNA binding protein
  • 8chromatin remodeller
Date released
  • 173November, 2017
  • 150August, 2017
  • 72September, 2018
  • November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 512fastq
  • 510bam
  • 437bigWig
  • 238bed narrowPeak
  • 199bigBed narrowPeak
  • 163tsv
  • 15bed broadPeak
  • 12bed bed3+
  • 11tagAlign
  • 8bigBed broadPeak
Organism
  • 506Homo sapiens
Biosample type
  • 191tissue
  • 189cell line
  • 115primary cell
  • 17in vitro differentiated cells
Organ
  • 225liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 10blood
  • 10bodily fluid
  • 4brain
  • 4embryo
Project
  • 512AMP
Genome assembly (visualization)
  • 437hg19
  • 432GRCh38
Lab
  • 511AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

512 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
tissue
islet of Langerhans6891
liver46
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
cell line
HepG217351
GM1287810
primary cell
pancreatic ductal cell13424
pancreatic endocrine cell23
pancreatic acinar cell8443
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego