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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 344ChIP-seq
  • 110total RNA-seq
  • 27single cell RNA-seq
  • 4ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 344DNA binding
  • 137Transcription
  • 8DNA accessibility
  • 13D chromatin structure
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 37histone
  • 37histone modification
  • 26RNA binding protein
  • 21broad histone mark
  • 16narrow histone mark
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 150August, 2017
  • September, 2018
  • 50November, 2018
  • 35December, 2017
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 12January, 2019
  • 8October, 2017
  • 4December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 490fastq
  • 488bam
  • 410bigWig
  • 237bed narrowPeak
  • 230bigBed narrowPeak
  • 137tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 484Homo sapiens
Biosample type
  • 227cell line
  • 203tissue
  • 43primary cell
  • 17in vitro differentiated cells
Organ
  • 262liver
  • 147pancreas
  • 32connective tissue
  • 27adipose tissue
  • 17epithelium
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 490AMP
Genome assembly (visualization)
  • 408hg19
  • 405GRCh38
Lab
  • 489AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 27inconsistent control
  • 7inconsistent ontology term
Audit category:
  • 31missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
month_released!
  • September, 2018
BIOSAMPLE
ASSAY

490 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
islet of Langerhans6891
liver501
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
primary cell
pancreatic endocrine cell12
pancreatic acinar cell24
co-expressing pancreatic endocrine cell2
endothelial cell2
mast cell2
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
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