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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
59
ChIP-seq
2
DNase-seq
Assay category
89
Transcription
59
DNA binding
2
DNA accessibility
Target of assay
33
histone
33
histone modification
18
transcription factor
17
broad histone mark
16
narrow histone mark
8
control
Date released
173
November, 2017
150
August, 2017
72
September, 2018
50
November, 2018
35
December, 2017
25
July, 2018
17
October, 2018
14
February, 2018
12
January, 2019
8
October, 2017
4
December, 2018
1
August, 2018
1
June, 2018
Available data
150
bam
150
fastq
142
bigWig
89
tsv
23
bed narrowPeak
19
bigBed narrowPeak
12
bed bed3+
7
bed broadPeak
6
tagAlign
2
bigBed broadPeak
Organism
144
Homo sapiens
Biosample type
133
tissue
14
primary cell
3
in vitro differentiated cells
Organ
120
pancreas
17
connective tissue
14
adipose tissue
11
liver
Project
150
AMP
Genome assembly (visualization)
143
hg19
142
GRCh38
Lab
150
AMP-T2D consortium
Audit category:
30
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
150 results
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total RNA-seq
ChIP-seq
DNase-seq
tissue
islet of Langerhans
89
6
pancreas
13
white adipose tissue
12
liver
11
adipose tissue
2
primary cell
pancreatic endocrine cell
12
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
2
1
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