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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 121ChIP-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 3DNase-seq
Assay category
  • 158Transcription
  • 121DNA binding
  • 21DNA accessibility
Target of assay
  • 61histone
  • 61histone modification
  • 36transcription factor
  • 32broad histone mark
  • 29narrow histone mark
  • 24control
  • 5RNA binding protein
  • 3other context
  • 3other post-translational modification
  • 1chromatin remodeller
Date released
  • 139August, 2017
  • 72September, 2018
  • 25July, 2018
  • 17October, 2018
  • 14February, 2018
  • 13November, 2018
  • 8October, 2017
  • 7January, 2019
  • 3December, 2018
  • 1August, 2018
  • 1June, 2018
Available data
  • 300fastq
  • 299bam
  • 276bigWig
  • 158tsv
  • 87bed narrowPeak
  • 51bigBed narrowPeak
  • 13bed bed3+
  • 10bed broadPeak
  • 10tagAlign
  • 3bigBed broadPeak
Organism
  • 294Homo sapiens
Biosample type
  • 152tissue
  • 115primary cell
  • 17in vitro differentiated cells
  • 16cell line
Organ
  • liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 300AMP
Genome assembly (visualization)
  • 277hg19
  • 276GRCh38
Lab
  • 299AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 62missing controlled_by
Audit category:
  • 5inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

300 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
tissue
islet of Langerhans8961
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
spleen6
primary cell
pancreatic ductal cell41324
pancreatic endocrine cell23
pancreatic acinar cell4843
pancreatic beta cell1024
pancreatic alpha cell1013
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
cell line
GM1287816
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