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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 311ChIP-seq
  • 19total RNA-seq
  • 8single cell RNA-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 311DNA binding
  • 27Transcription
  • 4DNA accessibility
  • 13D chromatin structure
Target of assay
  • 223transcription factor
  • 82recombinant protein
  • 73control
  • 25RNA binding protein
  • 13histone
  • 13histone modification
  • 9broad histone mark
  • 9chromatin remodeller
  • 4narrow histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 50November, 2018
  • 35December, 2017
  • 30August, 2017
  • 14February, 2018
  • 13October, 2018
  • 12January, 2019
  • 7July, 2018
  • 4December, 2018
  • 4October, 2017
  • 1June, 2018
Available data
  • 343fastq
  • 342bam
  • 266bigWig
  • 222bed narrowPeak
  • 218bigBed narrowPeak
  • 27tsv
  • 11bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 5tagAlign
Organism
  • 343Homo sapiens
Biosample type
  • 227cell line
  • 89tissue
  • 17in vitro differentiated cells
  • 10primary cell
Organ
  • 262liver
  • pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 343AMP
Genome assembly (visualization)
  • 264hg19
  • 261GRCh38
Lab
  • 343AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 2inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 7inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

343 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
cell line
HepG220551
GM1287816
tissue
liver501
white adipose tissue12
subcutaneous adipose tissue9
spleen6
brain41
in vitro differentiated cells
pancreatic endoderm4
adipocyte21
definitive endodermal cell2
embryonic stem cell2
posterior foregut2
primary cell
endothelial cell2
mast cell2
pancreatic epsilon cell2
skeletal muscle myoblast11
unclassified exocrine cell2
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