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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 255ChIP-seq
  • 5total RNA-seq
  • 1DNase-seq
  • 1Hi-C
Assay category
  • 255DNA binding
  • 5Transcription
  • 13D chromatin structure
  • 1DNA accessibility
Target of assay
  • 193transcription factor
  • 82recombinant protein
  • 52control
  • 21RNA binding protein
  • 8chromatin remodeller
  • 8histone
  • 8histone modification
  • 6broad histone mark
  • 2narrow histone mark
Date released
  • 173November, 2017
  • 37November, 2018
  • 35December, 2017
  • 11August, 2017
  • 5January, 2019
  • 1December, 2018
Available data
  • 262fastq
  • 261bam
  • 206bigWig
  • 196bed narrowPeak
  • 193bigBed narrowPeak
  • 7bed broadPeak
  • 7bigBed broadPeak
  • 5tsv
  • 1bed bed3+
  • 1tagAlign
Organism
  • 262Homo sapiens
Biosample type
  • 211cell line
  • 51tissue
Organ
  • 262liver
  • 219pancreas
  • 78epithelium
  • 32connective tissue
  • 27adipose tissue
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 5brain
  • 4embryo
Project
  • 262AMP
Genome assembly (visualization)
  • 203hg19
  • 201GRCh38
Lab
  • 262AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 1missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

262 results

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ChIP-seq
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DNase-seq
Hi-C
cell line
HepG220551
tissue
liver501
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