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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
total RNA-seq
65
ChIP-seq
19
single cell RNA-seq
18
ATAC-seq
Assay category
136
Transcription
65
DNA binding
18
DNA accessibility
Target of assay
56
histone
56
histone modification
29
broad histone mark
27
narrow histone mark
6
transcription factor
3
control
1
RNA binding protein
Date released
120
August, 2017
72
September, 2018
18
July, 2018
4
October, 2017
4
October, 2018
1
August, 2018
Available data
219
fastq
218
bam
216
bigWig
136
tsv
61
bed narrowPeak
26
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
tagAlign
Organism
213
Homo sapiens
Biosample type
114
tissue
105
primary cell
Organ
262
liver
219
pancreas
78
epithelium
32
connective tissue
27
adipose tissue
16
blood
16
bodily fluid
6
spleen
5
brain
4
embryo
Project
219
AMP
Genome assembly (visualization)
216
GRCh38
216
hg19
Lab
218
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
50
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
219 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
islet of Langerhans
89
6
1
pancreas
13
body of pancreas
2
3
primary cell
pancreatic ductal cell
4
13
2
4
pancreatic endocrine cell
23
pancreatic acinar cell
4
8
4
3
pancreatic beta cell
10
2
4
pancreatic alpha cell
10
1
3
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